PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00055163001
Common NameGSBRNA2T00055163001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 173aa    MW: 20331 Da    PI: 9.446
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00055163001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer79.54.3e-25353258
          ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                         +++ Y+eC++NhAa+lG++avDGC+E+ +       +++  CaACgCHR++HRr ++
  GSBRNA2T00055163001  3 SSCLYRECMRNHAAKLGSYAVDGCREYSQP------STGDLCAACGCHRSYHRRIEV 53
                         5789***********************998......56789*************765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-21450IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-18651IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-16750IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152318.087751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-1696169IPR009057Homeodomain-like
SuperFamilySSF466895.82E-8102168IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-29110169IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MQSSCLYREC MRNHAAKLGS YAVDGCREYS QPSTGDLCAA CGCHRSYHRR IEVQPSGQVT  60
RARFPFTSLR RVKQLARLKW KAAAEDREEQ EEQEEEDTEE TSTEERMTVK RRRKSKFTAE  120
QREAMRDYAA KLGWTLKDKR AVREEISVFC ERIGVTRYLF KTWVNNNKKF YH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115RRRKSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00055163001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117884.11e-126PREDICTED: zinc-finger homeodomain protein 14
SwissprotQ9LQW31e-93ZHD14_ARATH; Zinc-finger homeodomain protein 14
TrEMBLA0A078H8D41e-126A0A078H8D4_BRANA; BnaA09g45550D protein
TrEMBLM4EDF21e-126M4EDF2_BRARP; Uncharacterized protein
STRINGBra026812.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.12e-92homeobox protein 32
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]